Complex 1o9m
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.40 |
| System mass | 14.67 kDa |
| Deposition year | 2002 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 1o9m |
| Reference | Russell Rupert J. M., Murray James B., Lentzen Georg, Haddad Jalal, Mobashery Shahriar. 2003. The Complex of a Designer Antibiotic with a Model Aminoacyl Site of the 30S Ribosomal Subunit Revealed by X-ray Crystallography Journal of the American Chemical Society |
| Equivalence Class |
NR_all_52295.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | BDG |
| Residue | . / 2499 |
| Chain | C / B |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 120.74 Å3 |
| Hydrophobicity | 0.239 |
| Hydrophilicity | 0.733 |
| Buriedness | 0.557 |
| Don/acc character | 1.870 |
| SiteScore | 0.822 |
| D Score | 0.659 |
| Kd | — |