Complex 1nwy
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.30 |
| System mass | 1381.16 kDa |
| Deposition year | 2003 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Deinococcus |
| RCSB PDB Entry | 1nwy |
| Reference | Schlünzen Frank, Harms Jörg M, Franceschi Francois, Hansen Harly A.S, Bartels Heike, Zarivach Raz, Yonath Ada. 2003. Structural Basis for the Antibiotic Activity of Ketolides and Azalides Structure |
| Equivalence Class |
NR_all_88987.11
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | ZIT |
| Residue | . / 2881 |
| Chain | FA / 0 |
| Non-redundant | True |
| Interacting RNA chains | A/0 |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/0: rRNA |
| RNA family global | rRNA |
| Volume | 783.07 Å3 |
| Hydrophobicity | 0.428 |
| Hydrophilicity | 1.283 |
| Buriedness | 0.772 |
| Don/acc character | 1.444 |
| SiteScore | 0.643 |
| D Score | 0.985 |
| Kd | — |
| Compound | ZIT |
| Residue | . / 2882 |
| Chain | GA / 0 |
| Non-redundant | True |
| Interacting RNA chains | A/0 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/0: rRNA |
| RNA family global | rRNA |
| Volume | 544.68 Å3 |
| Hydrophobicity | 0.359 |
| Hydrophilicity | 1.296 |
| Buriedness | 0.764 |
| Don/acc character | 2.208 |
| SiteScore | 1.194 |
| D Score | 0.976 |
| Kd | — |