Complex 1j8g
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 0.61 |
| System mass | 8.86 kDa |
| Deposition year | 2001 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 1j8g |
| Reference | Deng Junpeng, Xiong Yong, Sundaralingam Muttaiya. 2001. X-ray analysis of an RNA tetraplex (UGGGGU) 4 with divalent Sr 2+ ions at subatomic resolution (0.61 Å) Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_12669.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SPM |
| Residue | . / 62 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: unknown |
| RNA family global | unknown |
| Volume | 95.35 Å3 |
| Hydrophobicity | 0.043 |
| Hydrophilicity | 0.931 |
| Buriedness | 0.527 |
| Don/acc character | 3.344 |
| SiteScore | 0.745 |
| D Score | 0.553 |
| Kd | — |