Complex 1i5l
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.75 |
| System mass | 120.21 kDa |
| Deposition year | 2001 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 1i5l |
| Reference | Törö Imre, Thore Stéphane, Mayer Claudine, Basquin Jérôme, Séraphin Bertrand, Suck Dietrich. 2001. RNA binding in an Sm core domain: X‐ray structure and functional analysis of an archaeal Sm protein complex The EMBO Journal |
| Equivalence Class |
NR_all_92489.7
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | URI |
| Residue | . / 201 |
| Chain | Q / A |
| Non-redundant | True |
| Interacting RNA chains | A/U |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/U: unknown |
| RNA family global | unknown |
| Volume | 168.41 Å3 |
| Hydrophobicity | 0.330 |
| Hydrophilicity | 1.296 |
| Buriedness | 0.774 |
| Don/acc character | 0.588 |
| SiteScore | 0.922 |
| D Score | 0.817 |
| Kd | — |