Complex 1f27
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.30 |
| System mass | 9.98 kDa |
| Deposition year | 2000 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 1f27 |
| Reference | Nix Jay, Sussman Django, Wilson Charles. 2000. The 1.3 å crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition 1 1Edited by I. Tinoco Journal of Molecular Biology |
| Equivalence Class |
NR_all_06439.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | BTN |
| Residue | . / 33 |
| Chain | H / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: unknown, B/B: unknown |
| RNA family global | unknown |
| Volume | 175.27 Å3 |
| Hydrophobicity | 0.749 |
| Hydrophilicity | 1.014 |
| Buriedness | 0.690 |
| Don/acc character | 1.616 |
| SiteScore | 1.143 |
| D Score | 1.014 |
| Kd | 1uM |