HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 1cvj

System information

Experimental technique X-ray
Experimental resolution 2.60
System mass 203.10 kDa
Deposition year 1999
Molecule type RNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 1cvj
Reference Deo Rahul C, Bonanno Jeffrey B, Sonenberg Nahum, Burley Stephen K. . Recognition of Polyadenylate RNA by the Poly(A)-Binding Protein Cell
Equivalence Class NR_all_78670.3, NR_all_85902.1, NR_all_87059.1
BGSU version: 4.49

Compound AMP
Residue . / 992
Chain Q / N
Non-redundant True
Interacting RNA chains B/N
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains B/N: unknown
RNA family global unknown
Volume 47.33 Å3
Hydrophobicity 0.338
Hydrophilicity 0.878
Buriedness 0.573
Don/acc character 0.222
SiteScore 0.499
D Score 0.422
Kd —

Compound AMP
Residue . / 993
Chain R / O
Non-redundant True
Interacting RNA chains C/O
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains C/O: unknown
RNA family global unknown
Volume 61.40 Å3
Hydrophobicity 0.304
Hydrophilicity 0.759
Buriedness 0.590
Don/acc character 0.635
SiteScore 0.503
D Score 0.432
Kd —

Compound AMP
Residue . / 995
Chain S / Q
Non-redundant True
Interacting RNA chains E/Q
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains E/Q: unknown
RNA family global unknown
Volume 52.14 Å3
Hydrophobicity 0.275
Hydrophilicity 0.809
Buriedness 0.568
Don/acc character 0.619
SiteScore 0.499
D Score 0.429
Kd —

Compound AMP
Residue . / 997
Chain T / S
Non-redundant True
Interacting RNA chains G/S
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains G/S: unknown
RNA family global unknown
Volume 109.42 Å3
Hydrophobicity 0.855
Hydrophilicity 0.738
Buriedness 0.626
Don/acc character 1.172
SiteScore 0.665
D Score 0.632
Kd —

Compound AMP
Residue . / 991
Chain U / A
Non-redundant True
Interacting RNA chains A/M
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains A/M: unknown
RNA family global unknown
Volume 54.88 Å3
Hydrophobicity 0.419
Hydrophilicity 0.853
Buriedness 0.609
Don/acc character 0.699
SiteScore 0.437
D Score 0.336
Kd —

Compound AMP
Residue . / 994
Chain V / D
Non-redundant True
Interacting RNA chains D/P
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains D/P: unknown
RNA family global unknown
Volume 91.24 Å3
Hydrophobicity 0.280
Hydrophilicity 0.995
Buriedness 0.610
Don/acc character 1.300
SiteScore 0.561
D Score 0.483
Kd —

Compound AMP
Residue . / 996
Chain W / F
Non-redundant True
Interacting RNA chains F/R
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains F/R: unknown
RNA family global unknown
Volume 104.27 Å3
Hydrophobicity 0.680
Hydrophilicity 0.711
Buriedness 0.613
Don/acc character 0.525
SiteScore 0.668
D Score 0.642
Kd —

Compound AMP
Residue . / 998
Chain X / H
Non-redundant True
Interacting RNA chains H/T
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains H/T: unknown
RNA family global unknown
Volume 80.95 Å3
Hydrophobicity 0.596
Hydrophilicity 0.793
Buriedness 0.605
Don/acc character 0.491
SiteScore 0.572
D Score 0.514
Kd —