Complex 1asz
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.00 |
| System mass | 161.43 kDa |
| Deposition year | 1995 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 1asz |
| Reference | Cavarelli J., Eriani G., Rees B., Ruff M., Boeglin M., Mitschler A., Martin F., Gangloff J., Thierry J.C., Moras D.. 1994. The active site of yeast aspartyl‐tRNA synthetase: structural and functional aspects of the aminoacylation reaction. The EMBO Journal |
| Equivalence Class |
NR_all_24819.7
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | ATP |
| Residue | . / 701 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | A/R |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/R: tRNA |
| RNA family global | tRNA |
| Volume | 766.95 Å3 |
| Hydrophobicity | 0.477 |
| Hydrophilicity | 1.257 |
| Buriedness | 0.876 |
| Don/acc character | 0.699 |
| SiteScore | 1.119 |
| D Score | 1.056 |
| Kd | — |
| Compound | ATP |
| Residue | . / 701 |
| Chain | F / B |
| Non-redundant | True |
| Interacting RNA chains | B/S |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/S: tRNA |
| RNA family global | tRNA |
| Volume | 723.39 Å3 |
| Hydrophobicity | 0.923 |
| Hydrophilicity | 1.166 |
| Buriedness | 0.888 |
| Don/acc character | 0.797 |
| SiteScore | 1.127 |
| D Score | 1.093 |
| Kd | — |